Package: CAMML 1.0.0

CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.

Authors:H. Robert Frost [aut], Courtney Schiebout [aut, cre]

CAMML_1.0.0.tar.gz
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CAMML_1.0.0.tgz(r-4.4-any)CAMML_1.0.0.tgz(r-4.3-any)
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CAMML_1.0.0.tgz(r-4.4-emscripten)
CAMML.pdf |CAMML.html✨
CAMML/json (API)

# Install 'CAMML' in R:
install.packages('CAMML', repos = c('https://schiebout.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.60 score 293 downloads 1 mentions 5 exports 173 dependencies

Last updated 1 years agofrom:89babdda92. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winNOTEOct 25 2024
R-4.5-linuxNOTEOct 25 2024
R-4.4-winOKOct 25 2024
R-4.4-macOKOct 25 2024
R-4.3-winOKOct 25 2024
R-4.3-macOKOct 25 2024

Exports:BuildGeneSetsCAMMLChIMPGetCAMMLLabelsGetGeneSets

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocManagerBiostringsbitbit64bitopsblobbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDBIdeldirdigestdotCall64dplyrdqrngedgeRevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglaterlatticelazyevalleidenlifecyclelimmalistenvlmtestlocfitmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslorg.Dr.eg.dborg.Hs.eg.dborg.Mm.eg.dbparallellypatchworkpbapplypillarpkgconfigplogrplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRSQLiteRtsneS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstatmodstringistringrsurvivalsystensortibbletidyrtidyselecttinytexUCSC.utilsutf8uwotVAMvctrsviridisLitewithrxfunxtableXVectoryamlzlibbioczoo

CAMML

Rendered fromCAMML_Vignette.Rnwusingutils::Sweaveon Oct 25 2024.

Last update: 2023-11-13
Started: 2021-12-01

CAMML_FigureVignette

Rendered fromCAMML_FigureVignette.Rnwusingutils::Sweaveon Oct 25 2024.

Last update: 2023-11-13
Started: 2021-12-15

CAMMLQuick

Rendered fromCAMML_Quick_Vignette.Rnwusingutils::Sweaveon Oct 25 2024.

Last update: 2023-11-13
Started: 2021-12-01

ChIMP

Rendered fromChIMPVignette.Rnwusingutils::Sweaveon Oct 25 2024.

Last update: 2023-11-13
Started: 2022-05-17