Package: CAMML 1.0.0

CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.

Authors:H. Robert Frost [aut], Courtney Schiebout [aut, cre]

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5 exports 0.49 score 173 dependencies 1 mentions 308 downloads

Last updated 10 months agofrom:89babdda92. Checks:OK: 5 NOTE: 2. Indexed: yes.

Exports:BuildGeneSetsCAMMLChIMPGetCAMMLLabelsGetGeneSets

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocManagerBiostringsbitbit64bitopsblobbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDBIdeldirdigestdotCall64dplyrdqrngedgeRevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglaterlatticelazyevalleidenlifecyclelimmalistenvlmtestlocfitmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslorg.Dr.eg.dborg.Hs.eg.dborg.Mm.eg.dbparallellypatchworkpbapplypillarpkgconfigplogrplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRSQLiteRtsneS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstatmodstringistringrsurvivalsystensortibbletidyrtidyselecttinytexUCSC.utilsutf8uwotVAMvctrsviridisLitewithrxfunxtableXVectoryamlzlibbioczoo