Package: CAMML 1.0.0

CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.

Authors:H. Robert Frost [aut], Courtney Schiebout [aut, cre]

CAMML_1.0.0.tar.gz
CAMML_1.0.0.zip(r-4.5)CAMML_1.0.0.zip(r-4.4)CAMML_1.0.0.zip(r-4.3)
CAMML_1.0.0.tgz(r-4.4-any)CAMML_1.0.0.tgz(r-4.3-any)
CAMML_1.0.0.tar.gz(r-4.5-noble)CAMML_1.0.0.tar.gz(r-4.4-noble)
CAMML_1.0.0.tgz(r-4.4-emscripten)
CAMML.pdf |CAMML.html✨
CAMML/json (API)

# Install 'CAMML' in R:
install.packages('CAMML', repos = c('https://schiebout.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.60 score 243 downloads 1 mentions 5 exports 172 dependencies

Last updated 1 years agofrom:89babdda92. Checks:5 OK, 2 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 23 2025
R-4.5-winNOTEJan 23 2025
R-4.5-linuxNOTEJan 23 2025
R-4.4-winOKJan 23 2025
R-4.4-macOKJan 23 2025
R-4.3-winOKDec 24 2024
R-4.3-macOKDec 24 2024

Exports:BuildGeneSetsCAMMLChIMPGetCAMMLLabelsGetGeneSets

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocGenericsBiocManagerBiostringsbitbit64bitopsblobbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDBIdeldirdigestdotCall64dplyrdqrngedgeRevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobandjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglaterlatticelazyevalleidenbaselifecyclelimmalistenvlmtestlocfitmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslorg.Dr.eg.dborg.Hs.eg.dborg.Mm.eg.dbparallellypatchworkpbapplypillarpkgconfigplogrplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRSQLiteRtsneS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstatmodstringistringrsurvivalsystensortibbletidyrtidyselecttinytexUCSC.utilsutf8uwotVAMvctrsviridisLitewithrxfunxtableXVectoryamlzoo

CAMML

Rendered fromCAMML_Vignette.Rnwusingutils::Sweaveon Jan 23 2025.

Last update: 2023-11-13
Started: 2021-12-01

CAMML_FigureVignette

Rendered fromCAMML_FigureVignette.Rnwusingutils::Sweaveon Jan 23 2025.

Last update: 2023-11-13
Started: 2021-12-15

CAMMLQuick

Rendered fromCAMML_Quick_Vignette.Rnwusingutils::Sweaveon Jan 23 2025.

Last update: 2023-11-13
Started: 2021-12-01

ChIMP

Rendered fromChIMPVignette.Rnwusingutils::Sweaveon Jan 23 2025.

Last update: 2023-11-13
Started: 2022-05-17